{
  "_id": "6a106652acfb0bcc41ca8e70",
  "Package": "glmm",
  "Type": "Package",
  "Title": "Generalized Linear Mixed Models via Monte Carlo Likelihood\nApproximation",
  "Version": "1.4.5",
  "Date": "2024-09-20",
  "Authors@R": "c(person(\"Christina\", \"Knudson\", role = c(\"aut\", \"cre\"),\nemail = \"drchristinaknudson@gmail.com\"), person(\"Charles J.\", \"Geyer\", role = \"ctb\",\nemail = \"geyer@umn.edu\"), person(\"Sydney\", \"Benson\", role = \"ctb\", email = \"bens0643@umn.edu\"))",
  "Maintainer": "Christina Knudson <drchristinaknudson@gmail.com>",
  "Description": "Approximates the likelihood of a generalized linear mixed\nmodel using Monte Carlo likelihood approximation. Then\nmaximizes the likelihood approximation to return maximum\nlikelihood estimates, observed Fisher information, and other\nmodel information.",
  "License": "GPL-2",
  "ByteCompile": "TRUE",
  "NeedsCompilation": "yes",
  "RoxygenNote": "7.0.2",
  "VignetteBuilder": "knitr",
  "Packaged": {
    "Date": "2026-05-08 05:55:30 UTC",
    "User": "root"
  },
  "Author": "Christina Knudson [aut, cre], Charles J. Geyer [ctb], Sydney\nBenson [ctb]",
  "Repository": "https://knudson1.r-universe.dev",
  "Date/Publication": "2024-09-23 03:00:25 UTC",
  "RemoteUrl": "https://github.com/cran/glmm",
  "RemoteRef": "HEAD",
  "RemoteSha": "ebacdba823202779784d2b8bc4cb9130956cf484",
  "MD5sum": "526d882855d9e7c1a5ddd0c6138e69a8",
  "_user": "knudson1",
  "_type": "src",
  "_file": "glmm_1.4.5.tar.gz",
  "_fileid": "ed10607018257a399247a5d51415355ef60bdd9d7df0c31a12f22589ad8b9bc4",
  "_filesize": 765792,
  "_sha256": "ed10607018257a399247a5d51415355ef60bdd9d7df0c31a12f22589ad8b9bc4",
  "_created": "2026-05-08T05:55:30.000Z",
  "_published": "2026-05-22T14:21:06.762Z",
  "_distro": "noble",
  "_jobs": [
    {
      "job": 77398623057,
      "time": 243,
      "config": "linux-devel-arm64",
      "r": "4.7.0",
      "check": "OK",
      "artifact": "6872835029"
    },
    {
      "job": 77398622574,
      "time": 196,
      "config": "linux-devel-x86_64",
      "r": "4.7.0",
      "check": "OK",
      "artifact": "6872825630"
    },
    {
      "job": 77398624149,
      "time": 200,
      "config": "linux-release-arm64",
      "r": "4.6.0",
      "check": "OK",
      "artifact": "6872826396"
    },
    {
      "job": 77398623865,
      "time": 209,
      "config": "linux-release-x86_64",
      "r": "4.6.0",
      "check": "OK",
      "artifact": "6872829512"
    },
    {
      "job": 77398623514,
      "time": 197,
      "config": "macos-oldrel-arm64",
      "r": "4.5.3",
      "check": "OK",
      "artifact": "6872825037"
    },
    {
      "job": 77398622641,
      "time": 363,
      "config": "macos-oldrel-x86_64",
      "r": "4.5.3",
      "check": "OK",
      "artifact": "6872860795"
    },
    {
      "job": 77398622960,
      "time": 124,
      "config": "macos-release-arm64",
      "r": "4.6.0",
      "check": "OK",
      "artifact": "6872811236"
    },
    {
      "job": 77398623033,
      "time": 406,
      "config": "macos-release-x86_64",
      "r": "4.6.0",
      "check": "OK",
      "artifact": "6872905940"
    },
    {
      "job": 77398622277,
      "time": 173,
      "config": "source",
      "r": "4.6.0",
      "check": "OK",
      "artifact": "6872785469"
    },
    {
      "job": 77398621872,
      "time": 100,
      "config": "wasm-release",
      "r": "4.6.0",
      "check": "OK",
      "artifact": "7162794210"
    },
    {
      "job": 77398622819,
      "time": 158,
      "config": "windows-devel",
      "r": "4.7.0",
      "check": "OK",
      "artifact": "6872818101"
    },
    {
      "job": 77398622874,
      "time": 137,
      "config": "windows-oldrel",
      "r": "4.5.3",
      "check": "OK",
      "artifact": "6872814084"
    },
    {
      "job": 77398622647,
      "time": 151,
      "config": "windows-release",
      "r": "4.6.0",
      "check": "OK",
      "artifact": "6872816775"
    }
  ],
  "_buildurl": "https://github.com/r-universe/knudson1/actions/runs/25539445360",
  "_status": "success",
  "_host": "GitHub-Actions",
  "_upstream": "https://github.com/cran/glmm",
  "_commit": {
    "id": "ebacdba823202779784d2b8bc4cb9130956cf484",
    "author": "Christina Knudson <drchristinaknudson@gmail.com>",
    "committer": "cran-robot <csardi.gabor+cran@gmail.com>",
    "message": "version 1.4.5\n",
    "time": 1727060425
  },
  "_maintainer": {
    "name": "Christina Knudson",
    "email": "drchristinaknudson@gmail.com",
    "login": "knudson1",
    "uuid": 7234150
  },
  "_registered": true,
  "_dependencies": [
    {
      "package": "R",
      "version": ">= 4.0",
      "role": "Depends"
    },
    {
      "package": "trust",
      "role": "Depends"
    },
    {
      "package": "mvtnorm",
      "role": "Depends"
    },
    {
      "package": "Matrix",
      "role": "Depends"
    },
    {
      "package": "parallel",
      "role": "Depends"
    },
    {
      "package": "doParallel",
      "role": "Depends"
    },
    {
      "package": "stats",
      "role": "Imports"
    },
    {
      "package": "foreach",
      "role": "Imports"
    },
    {
      "package": "itertools",
      "role": "Imports"
    },
    {
      "package": "utils",
      "role": "Imports"
    },
    {
      "package": "knitr",
      "role": "Suggests"
    },
    {
      "package": "V8",
      "role": "Suggests"
    }
  ],
  "_owner": "cran",
  "_selfowned": true,
  "_usedby": 0,
  "_updates": [],
  "_tags": [],
  "_stars": 2,
  "_contributors": [
    {
      "user": "knudson1",
      "count": 7,
      "uuid": 7234150
    }
  ],
  "_userbio": {
    "uuid": 7234150,
    "type": "user",
    "name": "Christina Knudson, Ph.D.",
    "description": "PhD in Statistics. Data Scientist. \r\n"
  },
  "_downloads": {
    "count": 595,
    "source": "https://cranlogs.r-pkg.org/downloads/total/last-month/glmm"
  },
  "_mentions": 32,
  "_searchresults": 265,
  "_topics": [
    "openblas"
  ],
  "_rbuild": "4.6.0",
  "_assets": [
    "extra/citation.cff",
    "extra/citation.html",
    "extra/citation.json",
    "extra/citation.txt",
    "extra/contents.json",
    "extra/glmm.html",
    "manual.pdf"
  ],
  "_realowner": "knudson1",
  "_cranurl": false,
  "_releases": [
    {
      "version": "1.0",
      "date": "2015-02-11"
    },
    {
      "version": "1.0.1",
      "date": "2015-02-12"
    },
    {
      "version": "1.0.2",
      "date": "2015-03-19"
    },
    {
      "version": "1.0.3",
      "date": "2015-04-28"
    },
    {
      "version": "1.0.4",
      "date": "2015-07-24"
    },
    {
      "version": "1.1.0",
      "date": "2016-08-13"
    },
    {
      "version": "1.1.1",
      "date": "2016-08-17"
    },
    {
      "version": "1.2",
      "date": "2017-07-25"
    },
    {
      "version": "1.2.1",
      "date": "2017-08-16"
    },
    {
      "version": "1.2.2",
      "date": "2017-11-07"
    },
    {
      "version": "1.2.3",
      "date": "2018-02-22"
    },
    {
      "version": "1.3.0",
      "date": "2018-12-11"
    },
    {
      "version": "1.4",
      "date": "2020-05-31"
    },
    {
      "version": "1.4.2",
      "date": "2020-06-21"
    },
    {
      "version": "1.4.3",
      "date": "2022-04-07"
    },
    {
      "version": "1.4.4",
      "date": "2022-10-09"
    },
    {
      "version": "1.4.5",
      "date": "2024-09-22"
    }
  ],
  "_exports": [
    "bernoulli.glmm",
    "binomial.glmm",
    "coef.glmm",
    "glmm",
    "logLik.glmm",
    "mcse",
    "mcvcov",
    "poisson.glmm",
    "se",
    "summary.glmm",
    "varcomps",
    "vcov.glmm"
  ],
  "_datasets": [
    {
      "name": "bacteria",
      "title": "Presence of Bacteria after Drug Treatments",
      "object": "bacteria",
      "file": "bacteria.rda",
      "class": [
        "data.frame"
      ],
      "fields": [
        "y",
        "ap",
        "hilo",
        "week",
        "ID",
        "trt",
        "y2"
      ],
      "rows": 220,
      "table": true,
      "tojson": true
    },
    {
      "name": "Booth2",
      "title": "A Logit-Normal GLMM Dataset",
      "object": "Booth2",
      "file": "Booth2.rda",
      "class": [
        "data.frame"
      ],
      "fields": [
        "y",
        "x1",
        "z1",
        "z2"
      ],
      "rows": 150,
      "table": true,
      "tojson": true
    },
    {
      "name": "BoothHobert",
      "title": "A Logit-Normal GLMM Dataset from Booth and Hobert",
      "object": "BoothHobert",
      "file": "BoothHobert.rda",
      "class": [
        "data.frame"
      ],
      "fields": [
        "y",
        "x1",
        "z1"
      ],
      "rows": 150,
      "table": true,
      "tojson": true
    },
    {
      "name": "cbpp2",
      "title": "Contagious Bovine Pleuropneumonia",
      "object": "cbpp2",
      "file": "cbpp2.rda",
      "class": [
        "data.frame"
      ],
      "fields": [
        "Y",
        "period",
        "herd"
      ],
      "rows": 842,
      "table": true,
      "tojson": true
    },
    {
      "name": "murder",
      "title": "Number of Homicide Victims Known",
      "object": "murder",
      "file": "murder.rda",
      "class": [
        "data.frame"
      ],
      "fields": [
        "y",
        "race",
        "black",
        "white"
      ],
      "rows": 1308,
      "table": true,
      "tojson": true
    },
    {
      "name": "radish2",
      "title": "Radish count data set",
      "object": "radish2",
      "file": "radish2.rda",
      "class": [
        "data.frame"
      ],
      "fields": [
        "Site",
        "Block",
        "Region",
        "Pop",
        "varb",
        "resp",
        "id"
      ],
      "rows": 233,
      "table": true,
      "tojson": true
    },
    {
      "name": "salamander",
      "title": "Salamander mating data set from McCullagh and Nelder (1989)",
      "object": "salamander",
      "file": "salamander.rda",
      "class": [
        "data.frame"
      ],
      "fields": [
        "Mate",
        "Cross",
        "Female",
        "Male"
      ],
      "rows": 360,
      "table": true,
      "tojson": true
    }
  ],
  "_help": [
    {
      "page": "bacteria",
      "title": "Presence of Bacteria after Drug Treatments",
      "topics": [
        "bacteria"
      ]
    },
    {
      "page": "bernoulli.glmm",
      "title": "Functions for the Bernoulli family.",
      "concept": [
        "generalized linear mixed model",
        "Monte Carlo",
        "likelihood approximation"
      ],
      "topics": [
        "bernoulli.glmm"
      ]
    },
    {
      "page": "binomial.glmm",
      "title": "Functions for the Binomial family.",
      "concept": [
        "generalized linear mixed model",
        "Monte Carlo",
        "likelihood approximation"
      ],
      "topics": [
        "binomial.glmm"
      ]
    },
    {
      "page": "Booth2",
      "title": "A Logit-Normal GLMM Dataset",
      "concept": [
        "generalized linear mixed model"
      ],
      "topics": [
        "Booth2"
      ]
    },
    {
      "page": "BoothHobert",
      "title": "A Logit-Normal GLMM Dataset from Booth and Hobert",
      "concept": [
        "generalized linear mixed model"
      ],
      "topics": [
        "BoothHobert"
      ]
    },
    {
      "page": "cbpp2",
      "title": "Contagious Bovine Pleuropneumonia",
      "topics": [
        "cbpp2"
      ]
    },
    {
      "page": "coef.glmm",
      "title": "Extract Model Coefficients",
      "concept": [
        "generalized linear mixed model"
      ],
      "topics": [
        "coef.glmm"
      ]
    },
    {
      "page": "confint.glmm",
      "title": "Calculates Asymptotic Confidence Intervals",
      "concept": [
        "generalized linear mixed model"
      ],
      "topics": [
        "confint.glmm"
      ]
    },
    {
      "page": "glmm",
      "title": "Fitting Generalized Linear Mixed Models using MCML",
      "concept": [
        "generalized linear mixed model",
        "Monte Carlo",
        "maximum likelihood",
        "likelihood approximation"
      ],
      "topics": [
        "glmm"
      ]
    },
    {
      "page": "logLik",
      "title": "Monte Carlo Log Likelihood",
      "concept": [
        "generalized linear mixed model",
        "Monte Carlo",
        "likelihood approximation"
      ],
      "topics": [
        "logLik.glmm"
      ]
    },
    {
      "page": "mcse",
      "title": "Monte Carlo Standard Error",
      "concept": [
        "generalized linear mixed model",
        "Monte Carlo",
        "maximum likelihood"
      ],
      "topics": [
        "mcse"
      ]
    },
    {
      "page": "mcvcov",
      "title": "Monte Carlo Variance Covariance Matrix",
      "concept": [
        "generalized linear mixed model",
        "Monte Carlo",
        "likelihood approximation"
      ],
      "topics": [
        "mcvcov"
      ]
    },
    {
      "page": "murder",
      "title": "Number of Homicide Victims Known",
      "concept": [
        "generalized linear mixed model"
      ],
      "topics": [
        "murder"
      ]
    },
    {
      "page": "poisson.glmm",
      "title": "Functions for the Poisson family.",
      "concept": [
        "generalized linear mixed model",
        "Monte Carlo",
        "likelihood approximation"
      ],
      "topics": [
        "poisson.glmm"
      ]
    },
    {
      "page": "radish2",
      "title": "Radish count data set",
      "concept": [
        "generalized linear mixed model"
      ],
      "topics": [
        "radish2"
      ]
    },
    {
      "page": "salamander",
      "title": "Salamander mating data set from McCullagh and Nelder (1989)",
      "concept": [
        "generalized linear mixed model"
      ],
      "topics": [
        "salamander"
      ]
    },
    {
      "page": "se",
      "title": "Standard Error",
      "concept": [
        "generalized linear mixed model"
      ],
      "topics": [
        "se"
      ]
    },
    {
      "page": "summary.glmm",
      "title": "Summarizing GLMM Fits",
      "concept": [
        "generalized linear mixed model",
        "Monte Carlo",
        "maximum likelihood"
      ],
      "topics": [
        "print.summary.glmm",
        "summary.glmm"
      ]
    },
    {
      "page": "varcomps.glmm",
      "title": "Extract Model Variance Components",
      "concept": [
        "generalized linear mixed model"
      ],
      "topics": [
        "varcomps"
      ]
    },
    {
      "page": "vcov.glmm",
      "title": "Variance-Covariance Matrix",
      "concept": [
        "generalized linear mixed model"
      ],
      "topics": [
        "vcov.glmm"
      ]
    }
  ],
  "_rundeps": [
    "codetools",
    "doParallel",
    "foreach",
    "iterators",
    "itertools",
    "lattice",
    "Matrix",
    "mvtnorm",
    "trust"
  ],
  "_sysdeps": [
    {
      "shlib": "liblapack",
      "package": "libopenblas0-pthread",
      "source": "openblas",
      "version": "0.3.26+ds-1ubuntu0.1",
      "name": "openblas",
      "homepage": "https://www.openblas.net/",
      "description": "Optimized BLAS (linear algebra) library (shared lib, pthread)"
    },
    {
      "shlib": "libblas",
      "package": "libopenblas0-pthread",
      "source": "openblas",
      "version": "0.3.26+ds-1ubuntu0.1",
      "name": "openblas",
      "homepage": "https://www.openblas.net/",
      "description": "Optimized BLAS (linear algebra) library (shared lib, pthread)"
    }
  ],
  "_vignettes": [
    {
      "source": "vignettes.Rnw",
      "filename": "vignettes.pdf",
      "title": "author2019mypaper",
      "engine": "utils::Sweave",
      "headings": [],
      "created": "2022-04-07 06:42:36",
      "modified": "2022-04-07 06:42:36",
      "commits": 1
    }
  ],
  "_score": 4.724275869600789,
  "_indexed": true,
  "_nocasepkg": "glmm",
  "_universes": [
    "knudson1"
  ],
  "_binaries": [
    {
      "r": "4.7.0",
      "os": "linux",
      "version": "1.4.5",
      "date": "2026-05-08T05:58:14.000Z",
      "distro": "noble",
      "arch": "aarch64",
      "commit": "ebacdba823202779784d2b8bc4cb9130956cf484",
      "fileid": "e81e13ee864a2d9c6f5d8af42860971a24549883d4880f49f0ec72217c989f3b",
      "status": "success",
      "check": "OK",
      "buildurl": "https://github.com/r-universe/knudson1/actions/runs/25539445360"
    },
    {
      "r": "4.7.0",
      "os": "linux",
      "version": "1.4.5",
      "date": "2026-05-08T05:57:18.000Z",
      "distro": "noble",
      "arch": "x86_64",
      "commit": "ebacdba823202779784d2b8bc4cb9130956cf484",
      "fileid": "db3bb6e6026e1f4071124defc98f70ff6af3079489dda21ce1bded49d37dbf90",
      "status": "success",
      "check": "OK",
      "buildurl": "https://github.com/r-universe/knudson1/actions/runs/25539445360"
    },
    {
      "r": "4.6.0",
      "os": "linux",
      "version": "1.4.5",
      "date": "2026-05-08T05:57:33.000Z",
      "distro": "noble",
      "arch": "aarch64",
      "commit": "ebacdba823202779784d2b8bc4cb9130956cf484",
      "fileid": "1c1f2240769db0067f41fd95117845c7a1e19a42ac3c333886a4f7c8c6df0b2d",
      "status": "success",
      "check": "OK",
      "buildurl": "https://github.com/r-universe/knudson1/actions/runs/25539445360"
    },
    {
      "r": "4.6.0",
      "os": "linux",
      "version": "1.4.5",
      "date": "2026-05-08T05:57:34.000Z",
      "distro": "noble",
      "arch": "x86_64",
      "commit": "ebacdba823202779784d2b8bc4cb9130956cf484",
      "fileid": "21c141612c59018435ea0b147a1fc194843dffd9961754eefe832fc01f362a26",
      "status": "success",
      "check": "OK",
      "buildurl": "https://github.com/r-universe/knudson1/actions/runs/25539445360"
    },
    {
      "r": "4.5.3",
      "os": "mac",
      "version": "1.4.5",
      "date": "2026-05-08T05:57:32.000Z",
      "arch": "aarch64",
      "commit": "ebacdba823202779784d2b8bc4cb9130956cf484",
      "fileid": "8a9cb614b8b73883ac60707bfa9305f30c14c146cfa1fdb9707c0ff2d355ce3f",
      "status": "success",
      "check": "OK",
      "buildurl": "https://github.com/r-universe/knudson1/actions/runs/25539445360"
    },
    {
      "r": "4.5.3",
      "os": "mac",
      "version": "1.4.5",
      "date": "2026-05-08T05:59:25.000Z",
      "arch": "x86_64",
      "commit": "ebacdba823202779784d2b8bc4cb9130956cf484",
      "fileid": "4bf2abf8bb9adc496e41e4b9415d00ac41a6be48cf7718c52d0679a04b6a30b3",
      "status": "success",
      "check": "OK",
      "buildurl": "https://github.com/r-universe/knudson1/actions/runs/25539445360"
    },
    {
      "r": "4.6.0",
      "os": "mac",
      "version": "1.4.5",
      "date": "2026-05-08T05:57:02.000Z",
      "arch": "aarch64",
      "commit": "ebacdba823202779784d2b8bc4cb9130956cf484",
      "fileid": "4592be71f2299c50c72d3285e57c280516baa470d9650abdaab22d98e9f9d40e",
      "status": "success",
      "check": "OK",
      "buildurl": "https://github.com/r-universe/knudson1/actions/runs/25539445360"
    },
    {
      "r": "4.6.0",
      "os": "mac",
      "version": "1.4.5",
      "date": "2026-05-08T06:02:38.000Z",
      "arch": "x86_64",
      "commit": "ebacdba823202779784d2b8bc4cb9130956cf484",
      "fileid": "9057d0837df9f0d7984d326fbcd86815de2be540e9912017994f83b31faeb74b",
      "status": "success",
      "check": "OK",
      "buildurl": "https://github.com/r-universe/knudson1/actions/runs/25539445360"
    },
    {
      "r": "4.7.0",
      "os": "win",
      "version": "1.4.5",
      "date": "2026-05-08T05:56:49.000Z",
      "arch": "x86_64",
      "commit": "ebacdba823202779784d2b8bc4cb9130956cf484",
      "fileid": "260db5993457eced7515ef3053d4523dd00dfe5e6ed967fbb5751668e29bafd1",
      "status": "success",
      "check": "OK",
      "buildurl": "https://github.com/r-universe/knudson1/actions/runs/25539445360"
    },
    {
      "r": "4.5.3",
      "os": "win",
      "version": "1.4.5",
      "date": "2026-05-08T05:56:38.000Z",
      "arch": "x86_64",
      "commit": "ebacdba823202779784d2b8bc4cb9130956cf484",
      "fileid": "522c45c9fa06e9b4f6f3c441c3028b57925df0d3a6bbc24ea64f3b442efc65a1",
      "status": "success",
      "check": "OK",
      "buildurl": "https://github.com/r-universe/knudson1/actions/runs/25539445360"
    },
    {
      "r": "4.6.0",
      "os": "win",
      "version": "1.4.5",
      "date": "2026-05-08T05:56:49.000Z",
      "arch": "x86_64",
      "commit": "ebacdba823202779784d2b8bc4cb9130956cf484",
      "fileid": "21f414f2bb0f213788ad38fc2b6f86513df4e105d8ebbe3a5c8422acfce97f89",
      "status": "success",
      "check": "OK",
      "buildurl": "https://github.com/r-universe/knudson1/actions/runs/25539445360"
    },
    {
      "r": "4.6.0",
      "os": "wasm",
      "version": "1.4.5",
      "date": "2026-05-22T14:20:48.000Z",
      "arch": "emscripten",
      "commit": "ebacdba823202779784d2b8bc4cb9130956cf484",
      "fileid": "f2ead62e7049df9e39071be3c073e65371dd649f040589a0804e70c36df5fe07",
      "status": "success",
      "buildurl": "https://github.com/r-universe/knudson1/actions/runs/25539445360"
    }
  ]
}